PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.WC719
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LSD
Protein Properties Length: 177aa    MW: 18803.8 Da    PI: 8.5461
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.WC719genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.41.1e-13731125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr +L YPrGA++V+CalC+t+
  Araip.WC719  7 CNGCRSILLYPRGATNVCCALCNTI 31
                 ***********************97 PP

2zf-LSD150.53.3e-164670125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggCrtlL+Y+rGA+sVRC++C+tV
  Araip.WC719 46 CGGCRTLLMYTRGATSVRCSCCQTV 70
                 ************************9 PP

3zf-LSD149.56.7e-1685109125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Crt+L+YP+GApsV+CalC+ V
  Araip.WC719  85 CGNCRTTLMYPYGAPSVKCALCQYV 109
                  ***********************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.8E-12434IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.7E-184372IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.3E-1382112IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-1485109IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQSQLVCNGC RSILLYPRGA TNVCCALCNT ITSVPPPGME MSQLVCGGCR TLLMYTRGAT  60
SVRCSCCQTV NLAPPAPSQV AHVHCGNCRT TLMYPYGAPS VKCALCQYVT NVNMNNGRLP  120
IPVHRPNGTT NYGTVPSTST SMPQSQTQTV VIENPMTVDS NGKLVSNVVV GVTTDKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0967071e-163BT096707.1 Soybean clone JCVI-FLGm-21G1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015957673.11e-125PREDICTED: protein LSD1
RefseqXP_016190733.11e-125PREDICTED: protein LSD1
SwissprotP940779e-76LSD1_ARATH; Protein LSD1
TrEMBLA0A0B2PG121e-113A0A0B2PG12_GLYSO; Protein LSD1
TrEMBLC6TGF71e-113C6TGF7_SOYBN; Uncharacterized protein
STRINGGLYMA05G30490.11e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.75e-74LSD family protein